PRATIK SHAH

All Publications

To be submitted: 2024 23rd IEEE International Conference on Machine Learning and Applications

2024

Deep learning with uncertainty quantification for predicting Dice coefficient of computational histopathology image segmentation

Audrey Xie, El Fatimi E, Ghosal S, Shah P*

( *Senior author supervising research)

To be submitted: 2024 23rd IEEE International Conference on Machine Learning and Applications


To be submitted: 2024 23rd IEEE International Conference on Machine Learning and Applications
Under review: 2024 Machine Learning for Healthcare Conference

2024

Uncertainty quantified deep learning and regression analysis framework for clinical regions of interest segmentation in skin lesions

El Houcine El Fatimi, Shah P*

( *Senior author supervising research)

Under review: 2024 Machine Learning for Healthcare Conference


Under review: 2024 Machine Learning for Healthcare Conference
arXiv:2312.13333 [eess.IV]

2023

Responsible deep learning for software as a medical device

Pratik Shah*, Lester J, Delfino J, Pai V

(*Senior author supervising research)

arXiv:2312.13333 [eess.IV]

IEEE International Symposium on Biomedical Imaging

2022

Biomedical imaging for equitable deep learning, regulatory science, and clinical research

Jenna Lester, Delfino J, Pai V, Shah P*

(*Senior author conceptualizing and leading the session)

IEEE International Symposium on Biomedical Imaging

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Cell Reports Methods 1, 100107, 2021

2021

A deep-learning toolkit for visualization and interpretation of segmented medical images

Sambuddha Ghosal and Shah P*

( *Senior author supervising research)

Cell Reports Methods 1, 100107, 2021

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arXiv:2011.05791 [stat.ML]

2021

Uncertainty quantified deep learning for predicting dice coefficient of digital histopathology image segmentation

Sambuddha Ghosal, Xie A, Shah P*

( *Senior author supervising research)

arXiv:2011.05791 [stat.ML]

SPIE Proceedings. DOI: 10.1117/12.2582303

2021

Automated end-to-end deep learning framework for classification and tumor localization from native non-stained pathology images

Akram Bayat, Anderson C, Shah P*

(*Senior author supervising research, Selected for Deep-dive spotlight session)

SPIE Proceedings. DOI: 10.1117/12.2582303

JAMA Network. DOI: 10.1001/jamanetworkopen.2020.5111

2020

Use of deep learning to develop and analyze computational hematoxylin and eosin staining of prostate core biopsy images for tumor diagnosis

Aman Rana, Lowe A, Lithgow M, Horback K, Janovitz T, Da Silva A, Tsai H, Shanmugam V, Bayat A, Shah P*

(*Senior author supervising research)

JAMA Network. DOI: 10.1001/jamanetworkopen.2020.5111

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Published at 61st American Society of Hematology Annual Meeting, Orlando, FL

2020

Artificial neural networks detect and classify hematologic malignancies or solid tumors using electronic medical records prior to clinical diagnosis

Yujia Zhou, Barnes C, Magoc T, Lipori G, Shah P, Cogle CR

Published at 61st American Society of Hematology Annual Meeting, Orlando, FL


Published at 61st American Society of Hematology Annual Meeting, Orlando, FL
Clinical Pharmacology and Therapeutics. PMID: 32202650

2020

Data science in clinical pharmacology and drug development for improving health outcomes in patients

Pratik Shah, Peck R, Vamvakas S, van der Graaf, Piet H

Clinical Pharmacology and Therapeutics. PMID: 32202650

Proceedings of a Workshop, National Academies of Sciences, Engineering, and Medicine. Washington, DC: The National Academies Press. PMID: 31386317

2019

Improving cancer diagnosis and care: clinical application of computational methods in precision oncology

Proceedings of a Workshop, National Academies of Sciences, Engineering, and Medicine. Washington, DC: The National Academies Press. PMID: 31386317

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41st IEEE EMBC Conference. PMID: 31946594

2019

Wearable lab on body: combining sensing of biochemical and digital markers in a wearable device

Pat Pataranutaporn, Jain A, Johnson C, Shah P, Maes P

41st IEEE EMBC Conference. PMID: 31946594

Nature Digital Medicine. DOI: 10.1038/s41746-019-0148-3

2019

Artificial intelligence and machine learning in clinical development: a translational perspective

Pratik Shah* et al.

(*Corresponding author)

Nature Digital Medicine. DOI: 10.1038/s41746-019-0148-3

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Trends in Pharmacological Sciences. PMID: 31326235

2019

Artificial Intelligence for clinical trial design

Stefan Harrer, Shah P, Antony P, Hu J

Trends in Pharmacological Sciences. PMID: 31326235

41st IEEE International Engineering in Medicine and Biology Conference. DOI: 10.1109/EMBC.2019.8857734

2019

Digital reconstruction of teeth using near-infrared light

Keith Angelino, Yauney G, Rana A, Muftu A, Edlund D, Shah P*

(*Senior author supervising research)

41st IEEE International Engineering in Medicine and Biology Conference. DOI: 10.1109/EMBC.2019.8857734

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41st IEEE International Engineering in Medicine and Biology Conference. DOI: 10.1109/EMBC.2019.8857965

2019

Automated process incorporating machine learning segmentation and correlation of oral diseases with systemic health

Gregory Yauney, Rana A, Javia P, Wong L, Muftu A, Shah P*

(*Senior author supervising research)

41st IEEE International Engineering in Medicine and Biology Conference. DOI: 10.1109/EMBC.2019.8857965

Proceedings of the 3rd Machine Learning for Healthcare Conference. PMLR 85:161-226

2018

Reinforcement learning with action-derived rewards for chemotherapy and clinical trial dosing regimen selection

Gregory Yauney, Shah P*

(*Senior author supervising research)

Proceedings of the 3rd Machine Learning for Healthcare Conference. PMLR 85:161-226

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17th IEEE International Conference of Machine Learning and Applications. DOI: 10.1109/ICMLA.2018.00133

2018

Computational histological staining and destaining of prostate core biopsy RGB images with generative adversarial neural networks

Aman Rana, Yauney G, Lowe A, Shah P*

(*Senior author supervising research)

17th IEEE International Conference of Machine Learning and Applications. DOI: 10.1109/ICMLA.2018.00133

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17th IEEE International Conference of Machine Learning and Applications. DOI: 10.1109/ICMLA.2018.00097

2018

Machine learning algorithms for classification of microcirculation images from septic and non-septic patients

Perikumar Javia, Rana A, Shapiro NI, Shah P*

(*Senior author supervising research)

17th IEEE International Conference of Machine Learning and Applications. DOI: 10.1109/ICMLA.2018.00097

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The British Medical Journal Open. PMID: 29678964

2018

Technology-enabled examinations evaluated jointly with routine health screenings: an observational study at the 2015 Kumbh Mela in India

Pratik Shah*, Yauney G, Gupta O, Patalano V, Mohit M, Merchant R, Subramanian SV

(*Senior author supervising research, Contributed equally)

The British Medical Journal Open. PMID: 29678964

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17<sup>th</sup> annual IEEE International Conference on BioInformatics and BioEngineering. DOI: 10.1109/BIBE.2017.00-37

2017

Convolutional neural network for combined classification of fluorescent biomarkers and expert annotations using white light images

Gregory Yauney, Angelino K, Edlund D, Shah P*

(*Senior author supervising research, Selected for oral presentation)

17th annual IEEE International Conference on BioInformatics and BioEngineering. DOI: 10.1109/BIBE.2017.00-37

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IEEE-NIH 2017 Special Topics Conference on Healthcare Innovations and Point-of-Care Technologies. DOI: 10.1109/HIC.2017.8227605

2017

Automated segmentation of gingival diseases from oral images

Aman Rana, Yauney G, Wong L, Muftu A, Shah P*

(*Senior author supervising research)

IEEE-NIH 2017 Special Topics Conference on Healthcare Innovations and Point-of-Care Technologies. DOI: 10.1109/HIC.2017.8227605

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BMC Oral. PMID: 29284461

2017

Clinical validation and assessment of a modular fluorescent imaging system and algorithm for rapid detection and quantification of dental plaque

Pratik Shah*, Angelino K, Edlund D, Mohit M, Yauney G

(*Senior author supervising research, Contributed equally)

BMC Oral. PMID: 29284461

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ACS Sensors. PMID: 29090909

2017

Detection of biomarkers of periodontal disease in human saliva using stabilized, vertical flow immunoassays

Emma Yee, Lathwal S, Shah P, Sikes H

ACS Sensors. PMID: 29090909

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17<sup>th</sup> annual IEEE International Conference on BioInformatics and BioEngineering. DOI: 10.1109/BIBE.2017.00-33

2017

Near-infrared transillumination guides administration of dental 2D radiography and CBCT imaging

Keith Angelino, Edlund D, Bhatia G, Wu S, Shah P*

(*Senior author supervising research, Selected for oral presentation)

17th annual IEEE International Conference on BioInformatics and BioEngineering. DOI: 10.1109/BIBE.2017.00-33

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Journal of Translational Engineering in Health and Medicine. PMID: 28507826

2017

Near-infrared imaging for detecting caries and structural deformities in teeth

Keith Angelino, Edlund D and Shah P*

(*Senior author supervising research)

Journal of Translational Engineering in Health and Medicine. PMID: 28507826

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Conf Proc IEEE Eng Med Biol Soc. PMID: 28268691

2016

Design and preliminary evaluation of a wearable device for mass screening of sleep apnea

Rohan Puri, Athanasios A, Gill N, Sathya S, Rathod G, Wahi A, Satat G, Majmudar M, Shah P*

(*Senior author supervising research)

Conf Proc IEEE Eng Med Biol Soc. PMID: 28268691

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ACM SIGGRAPH Course. DOI: 10.1145/2897826.2927371

2016

Capturing the human body: from VR, consumer, to health applications

Hao Li, Lei W, Swedish T, Shah P, Raskar R

ACM SIGGRAPH Course. DOI: 10.1145/2897826.2927371

Computer Vision Pattern Recognition Tutorial

2016

Clinical imaging of the human body: for health, visualization and predictive analytics

Ramesh Raskar, Shah P, Swedish T, Mohit M

Computer Vision Pattern Recognition Tutorial